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HLB and Canker Incidence Increasing in Brazil

 SEPTEMBER 27, 2022 BRAZIL DISEASES

The average incidence of HLB rose from 22.37% in 2021 to 24.42% in 2022 in Brazil’s citrus belt, an annual survey by Fundecitrus shows. That’s an increase of 9.16%.

HLB
Inadequate psyllid control is a major reason that HLB is on the rise in Brazil.

In the regions of Brotas, Limeira and Porto Ferreira, where the incidence was already high in previous years, HLB increased to even more worrying levels of 49.41%, 70.72% and 74.05%, respectively. HLB is also commonly called greening disease.

“We are seeing the disease grow at a worrying speed,” said Fundecitrus General Manager Juliano Ayres. “However … the results obtained in properties in regions that have registered a decline or stabilization of the disease reinforce our confidence that the measures to combat greening are effective. This has always been the way and always will be, until we manage to reach plants resistant to the disease. However, we need more efforts” to control HLB.

REASONS FOR HLB INCREASE

Fundecitrus reported that most regions have a favorable climate for HLB. Additionally, most regions have a high density of orchards and a large number of medium and small properties. Those factors make it difficult to coordinate joint actions for the regional management of the disease.

Most importantly though, Fundecitrus stated, in most orchards in production, diseased trees are not being eliminated, and control of HLB-spreading psyllids has been inadequate. Inefficient spraying has also contributed to the increase in HLB.

“This work has not been done with the necessary frequency, especially in the sprouting seasons,” said Fundecitrus researcher Renato Bassanezi. “Failures in spray coverage have also been observed, mainly at the top of the canopy of adult trees and in dense orchards.”

Also impairing the effectiveness of psyllid control is the repetitive use of insecticides from the pyrethroid group without adequate rotation with insecticides with other modes of action, Fundecitrus stated. That has led to the detection of psyllid resistance to the pyrethroid group in some places.

BIG JUMP IN CANKER

The Fundecitrus survey also showed growth in the incidence of canker in orchards. According to the new survey, the disease is present in 18.77% of the trees, an increase of 74.44%.

Canker accounts for just 0.21% of fruit drop across the citrus belt. The low rate is related to studies carried out by Fundecitrus that adjust the use of copper in the management of the disease. That adjustment doesn’t impact the effectiveness of the treatment and generates savings of 56% in the amount of product used per hectare.

CVC REMAINS LOW

The incidence of CVC remains low throughout Brazil’s citrus industry, with an incidence of just 0.80% in 2022. About 20 years ago, the disease was present in 46% of the trees. The significant reduction is mainly due to the evolution of research and management practices disseminated by Fundecitrus.

Source: Fundecitrus

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First plant disease detection found in California; quarantine in place

Steve Angeles | TFC News California

Posted at Oct 27 2022 12:14 PM

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HLB on young tree

In Southern California, state agriculture officials are expanding a citrus plant quarantine in Los Angeles county after the citrus disease Huanglongbing (HLB) was detected in Pomona. 

Asian citrus psyllid

The plant disease is not harmful to people or animals but can greatly affect citrus plants. HLB is spread from plant to plant by the Asian citrus psyllid. Once a tree is infected it cannot be cured. 

ACP

According to the Citrus Pest & Disease program’s press release, a citrus plant quarantine is in place throughout portions of Los Angeles, Orange, Riverside, San Bernardino and San Diego counties. To further limit the spread of the pest that can carry HLB, there are additional quarantines in place that make it illegal to bring citrus fruit or plant material into California from other states or countries. 

The new quarantine map can be found at https://www.cdfa.ca.gov/citrus/pests_diseases/hlb/regulation.html.

Yellowing leaves

All citrus trees including, lemons, oranges, and limes can be affected by HLB.

While an outbreak of HLB could impact local citrus industries, backyard gardeners also need to be cautious. 

An estimated 60% of California homeowners own citrus trees, and a popular one among Filipino homes, is calamansi. 

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Read More:  Huanglongbing   HLB   Asian Citrus Psyllid   ACP   plant disease   quarantine   TFC News  

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Scientific Reports

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Predicting potential global and future distributions of the African armyworm (Spodoptera exempta) using species distribution models

Scientific Reports volume 12, Article number: 16234 (2022) Cite this article

Abstract

Invasive species have historically been a problem derived from global trade and transport. To aid in the control and management of these species, species distribution models (SDMs) have been used to help predict possible areas of expansion. Our focal organism, the African Armyworm (AAW), has historically been known as an important pest species in Africa, occurring at high larval densities and causing outbreaks that can cause enormous economic damage to staple crops. The goal of this study is to map the AAW’s present and potential distribution in three future scenarios for the region, and the potential global distribution if the species were to invade other territories, using 40 years of data on more than 700 larval outbreak reports from Kenya and Tanzania. The present distribution in East Africa coincides with its previously known distribution, as well as other areas of grassland and cropland, which are the host plants for this species. The different future climatic scenarios show broadly similar potential distributions in East Africa to the present day. The predicted global distribution shows areas where the AAW has already been reported, but also shows many potential areas in the Americas where, if transported, environmental conditions are suitable for AAW to thrive and where it could become an invasive species.

Introduction

Global trade and transport have historically led to the movement of organisms, mostly for domestication, farming, etc. where they are in a controlled environment1,2. However, some movements of species are unintentional and can result in species becoming invasive in these new areas3,4,5. Invasive species, therefore, can produce massive economic and environmental damage due to their ability to spread without limitations6,7,8; and insects, being the most diverse group of organisms on Earth, are also one of the most invasive9. Some of the major problems caused by invasive insects include human disease vectors and agricultural and forest pests10, often impacting the health and economy of the countries affected11. Some well-known recent examples of invasive agricultural pests are the cotton bollworm, Helicoverpa armigera (Hübner), the diamondback moth, Plutella xylostella (Linnaeus), and the fall armyworm, Spodoptera frugiperda (J. E. Smith)12,13,14.

The African Armyworm (AAW) is the larval stage of the noctuid moth Spodoptera exempta (Walker, 1856). Like other armyworms15, AAW is considered a major pest species, historically the most important after locusts in parts of Africa16,17. AAW often occurs at high larval densities, causing outbreaks and, therefore, significant economic damage to crops and pasturelands16,18. The species is widely distributed across sub-Saharan Africa, where it especially affects Central, Eastern and Southern Africa, but the presence of the species has also been reported in Arabia, Southeast Asia, and Australia19,20,21. AAW caterpillars are a major pest of cereals and grasses, including some of the most economically important crops such as maize, rice or wheat22. Generally, low-density populations of the larvae persist throughout the continent, usually going unnoticed as they are in small numbers and have a cryptic coloration23. Many studies (e.g.24,25,26) have pointed out that it is after the first (short) rainy season in East Africa (around November or December) that the ‘primary’ (first) outbreaks occur. These outbreaks are caused by the mating and oviposition of the adult moths emerging from the low-density (dry season) populations, which are dispersed and scattered by the rainy season winds and end up concentrating in patchy areas where rainfall occurs27,28, that is thought to be due to convergent wind flows23. After these primary outbreaks, the long rainy season initiates a series of ‘secondary’ outbreaks, throughout eastern and central Africa, which may cause massive damage to crops, and can be monitored and predicted thanks to meteorological observation and monitoring27,29,30. In some countries, like Zambia, its maize production in 2012–2013 was reduced by 11% due to AAW attack31 and in 2017 it was estimated that 30–40% of the crop production could have been lost due to this pest32.

Since at least 1930, AAW outbreaks and moth trap data, as well as some meteorological data, have been collected in the most affected countries, including Kenya and Tanzania16,21. Subsequently, these data have been digitised and incorporated into data management and information systems, such as WormBase33, which was developed in the 1990s to aid in the prediction of AAW outbreaks. In the present study, we use forty years of AAW outbreak data to model the environmental suitability of the pest.

Species distribution models (SDMs) are modern tools that are used to characterize and predict the present and future distribution of a species, using species distribution data and environmental variables that affect, directly or indirectly, the species’ ecological niche or environmental suitability34,35,36. This provides a very useful tool for pest management activities, as it can help identify areas where the species might be present or vulnerable areas for the pest37,38,39. SDMs have been used to model the environmental suitability of other similar pest species, such as the fall armyworm, S. frugiperda, FAW, which is native to the Americas, but has recently invaded and spread throughout sub-Saharan Africa, into areas where the African armyworm is endemic14. This work was used to predict new areas in the world that could be suitable for FAW expansion, including parts of Asia and Oceania; predictions that have subsequently been realised (https://www.fao.org/fall-armyworm/monitoring-tools/faw-map/en/). Although the distribution of S. exempta in Africa and Arabia has been well established for at least 40 years21, and much is known about its feeding and migratory behaviour16, there is little information about its broader environmental requirements.

In this study, we generate the first predictive environmental suitability models for the African armyworm, using species distribution modelling techniques. We use occurrence data from reported larval outbreaks in Kenya and Tanzania, and variable selection methods to define the principal environmental variables that affect the geographical distribution of S. exempta. The generated models, which are local to Kenya and Tanzania, predict the present and future environmental suitability of the species under three different future-climate scenarios. For predicting the present suitability, we used the outbreak data from 1969 to 1990 and contrasted the generated model with the rest of the data, from 1991 to 2008. This meant we validated our model against data that are more independent than used in the majority of SDM studies, a highly recommended approach40. For the three future climate scenario models, we used all the outbreak data from Kenya and Tanzania, from 1969 to 2008 to forecast the 2061–2080 time period. We also model the global environmental suitability for the species by extrapolating these local data to the rest of the world to assess its invasion potential. Finally, we determine if models suggest that the African armyworm’s future distribution will likely intersect areas of cropland, which could demonstrate a need for preventive and control measures to target the vulnerable areas before they are attacked.

Results

Variable selection

The variable selection through PCA narrowed the environmental suitability components to five (Table 1). The variables are related to temperature and precipitation, and the AAW response to them can be seen in Fig. 1. Bioclim 07 (temperature range throughout the year) suggests that AAW do best in locations where the temperature variation is greater than around 12 °C annually. Variable Bioclim 08 is related to temperature during the wettest quarter and seems to suggest that AAW prefer temperatures between 15 and 25 °C during the rainy season, and anything greater than 25 °C is much less suitable. Variable Bioclim 15 is related to the seasonality of precipitation and suggests that AAW do best when rainfall varies by around 80–100 mm annually. Finally, Bioclim 13 and 17 are related to the amount of precipitation during the wet and dry season, respectively. During the wettest month, it seems to require a minimum of around 100 mm rain, but also seems to have a maximum of around 300 mm rain, above which it is less suitable, perhaps indicating its susceptibility to floods. During the driest quarter, it seems to be more versatile and can tolerate a wide range of precipitation, but there appears to be a minimum rainfall of around 10 mm, indicating that is also susceptible to drought.Table 1 Variables selected by the PCA for the S. exempta environmental suitability models.

Full size table

figure 1
Figure 1

Model performance

The receiver operation characteristic (ROC) curve is a graphical way of illustrating the model’s ability to distinguish between binary classes at various threshold settings, and area under the curve (AUC) of the ROC is a value that measures the degree to which these classes can be distinguished between. This means that the closer to 1 the AUC value is, the better the model will be at separating classes, which in this case would be the environmental suitability of the species. AUC values of our models are considered to be ‘excellent’41, and TSS, values are considered ‘moderate’ and ‘substantial’42, therefore showing a good performance of the models, and that they are robust and accurate (Table 2). This indicates that the ecological suitability suggested by the generated models resemble the real probability of occurrence of the species, and therefore, its possible distribution.Table 2 Internal evaluation statistics for the generated species distribution models (SDMs) generated.

Full size table

Environmental suitability of S. exempta

Present-time environmental suitability models for the AAW in Kenya and Tanzania (Fig. 2A) show high suitability in the south and west of Kenya and the north and centre of Tanzania. These areas coincide with the occurrence points from the outbreak data used (blue dots in Fig. 2A); outbreaks are usually reported on crops such as maize, so it is likely that environmental suitability overlaps with agricultural land use. These suitable areas also coincide with sub-humid and tropical highlands; the paler or non-suitable areas coincide with more arid conditions, such as north-eastern Kenya43. Figure 2B shows a land use map extracted from Ref.44, indicating that the vegetation in the suitable areas of our model (Fig. 2A) are mainly grasslands, savannas and croplands. Regarding the prediction of the 1991–2008 outbreaks, all the points (yellow dots in Fig. 2A) seem to fall in areas with medium to high suitability, with AUC = 0.90, considered as ‘excellent’41, which indicates the model can accurately predict the areas that are suitable for outbreaks in the near future.

figure 2
Figure 2

Future and worldwide environmental suitability scenarios

Figure 3 presents three maps that show the difference in environmental suitability between present-time and three different CO2 emission scenarios between 2061 and 2080 in Kenya and Tanzania. The outputs of the three scenarios are very similar to each other. Scenario SSP1-2.6 (a gradual decline in CO2 emissions) show fewer gained areas (74,075 km2) than lost (109,500 km2), and the same happens with the extreme CO2 emission increase scenario—SSP5-8.5 (70,425 km2 of gained areas; 161,425 km2 of lost areas). Gained areas (109,625 km2) for scenario SSP3-7.0 (gradual increase in CO2 emissions), are however similar to the lost areas (106,350 km2). These results depict a future where the species seems to have a limited spread. Gained areas coincide mainly with cropland and grassland45,46. This all suggests that climate change might help the AAW distribution to expand and take over areas of grassland and cropland; but also limit its expansion in other areas where too many emissions might destroy these grasses and crops.

figure 3
Figure 3

The world environmental suitability model shows a marked high suitability in tropical areas, especially related to high, but not extreme, temperatures and precipitation (Fig. 4). It appears that the suitability overlaps the distribution of grasses, which is historically the main food source of the AAW, as it is noticeable in the Savannas, Pampas and Veldts, and seems to be delimited by arid areas and tropical deserts (e.g. Sahara, Kalahari, Atacama, etc.) as well as areas of extreme rainfall like rainforests (e.g. Amazon, Congo River Basin, South East Asia and Australian). However, as the models have only been constructed with climatic variables and not land use rasters, we cannot be completely certain that these forested areas could be suitable if converted to agriculture.

figure 4
Figure 4

When looking at the recorded distribution of AAW globally21 (Fig. 5), it very much resembles the world environmental suitability model (Fig. 4). Grey areas show where the projections are extrapolated outside of the climate conditions used to build the SDM, according to the results of the MESS approach47. Projections in these areas should be treated with extreme caution, as there is no way of knowing how accurate they are. In Africa, there is high suitability in the eastern, western, and central areas, where larval infestations have been recorded, even on the west of southern Africa. Madagascar is also predicted to be suitable for AAW outbreaks, although no larval infestations have been recorded there to our knowledge, but moth specimens have been found, indicating the possibility of being there. In Arabia, which has extensive larval infestations, only a limited area is predicted to be suitable, and with only medium suitability, probably due to it not being a very suitable climate, but in practice, irrigation could have permitted its viability and expansion. There is very high suitability in the west and south of India, and Sri Lanka (Figs. 45), which coincides with the ghats where grasses are present, but the species has not yet been recorded there. Many AAW larval infestations and outbreaks have been reported in southern (but not northern) parts of Southeast Asia and the western Australian coast, coinciding with areas of medium to high suitability. With the exception of Hawaii48—where the model shows high suitability—the species has never been reported in the Americas. Nonetheless, the model does predict very high environmental suitability in some countries like Brazil, Colombia and Mexico (Fig. 4), which sets an alarm for its potential distribution and settlement if the species was to reach those areas. All this indicates that the model has been able to predict most of the actual worldwide distribution, using a database limited to a relatively small area in East Africa, and therefore, that it is a robust model.

figure 5
Figure 5

Discussion

In a world in which crop production often revolves around extensive monocultures, and global changes in climate and trade facilitate the spread of insect crop pests, there is increased potential for the introduction and spread of invasive species49,50,51. Understanding the environmental requirements of potentially invasive crop pests can identify areas at threat and facilitate targeted monitoring. Some authors have previously tried to do this by generating current or potential Species Distribution Models. Examples include important invasive pest species, such as the cotton bollworm, H. armigera, the diamondback moth, P. xylostella, the gypsy moth, Lymantria dispar (L.), the spotted wing drosophila, Drosophila suzukii (Matsamura), the European paper wasp, Polistes dominula (Christ), and the fall armyworm, S. frugiperda12,13,14,52,53. In this study we have constructed SDMs for the African armyworm, S. exempta, a pest endemic to sub-Saharan Africa. Our results identify those climatic variables that seem most important in determining the geographical distribution of AAW and provide a robust SDM for Kenya and Tanzania in the present time, as well as three different future climate change scenarios. We expand this to a predictive worldwide model that identifies areas, especially in the Americas and South Asia, where AAW has the potential to become invasive if it were introduced.

Selected variables for the environmental suitability of African armyworm outbreaks are mainly related to annual temperature variation and precipitation, especially during the wettest quarter, which is the rainy season. The rainy season plays an important role in the movement of AAW adults in Africa, as the winds that occur during it are key for the dispersal of the adult moths. Existing literature23,26,29,54 indicates that adult moths migrate along the dominant winds to grassland areas or crops, where they feed, causing subsequent larval outbreaks in nearby areas where they can disperse or migrate to. Precipitation outside the rainfall season is important for the low density populations of AAW that persist in these areas where outbreaks have occurred, during the dry season, as it stimulates the growth of grasses, providing the AAW with suitable habitats for feeding and breeding55, which could explain why variables like ‘precipitation seasonality’ or ‘precipitation of the driest quarter’ have been identified as important explanatory variables. Nonetheless, the areas where outbreaks occur (which we modelled) are not always the same as the ones where low-density populations settle (which we did not explicitly model). Temperature changes affect the species distribution too because, being ectotherms, their development and survival are temperature-dependent56.

The local present-time model depicts a robust environmental suitability for S. exempta in Kenya and Tanzania (Fig. 2A). Low environmental suitability coincides with arid or semi-arid areas, which may seem evident as extreme temperatures and dry conditions are not ideal for the development of its eggs and pupae56,57. Indeed, water and ambient humidity scarcity can affect the water balance of insects, impacting their survival, development and even their population dynamics, as seen in similar species, the FAW58. Climatic conditions in these areas can also affect its suitability indirectly. For example, changes in the water content and concentration of nitrogen and other minerals of the host plants, can negatively impact AAW adults’ fitness59. Additionally, plants that grow in arid or semi-arid areas are not suitable host plants of the AAW16, which mainly feeds on Graminae, and these require a certain level of humidity for their development. According to the generated model, sub-humid and tropical highlands are the most suitable areas for the AAW and, the known distribution of the AAW, besides the biology of the species, coincide with these areas. During the dry season, low-density armyworm populations are usually found in the highlands as the low temperatures extend their development16, which may explain why these tropical highlands are highly suitable. Looking at land cover and vegetation maps (e.g.44,45), the vegetation present in the suitable areas are mainly grasslands, savannas and croplands, which are the main host plants for the AAW.

The predictions of the environmental suitability for the 1991–2008 outbreaks (not included in the training dataset), appear to be accurate and robust, indicating that modelling present environmental suitability can be useful to predict outbreaks in the near future. These predictions can also be combined with population dynamic studies to predict outbreaks of the next few years, like other authors have previously done30,60,61.

Local future-scenario models (Fig. 3) are useful to predict where the species might be present in some years’ time. It is evident that climate change is altering the environmental conditions, therefore redesigning where species can live. It has been thoroughly documented that the distribution of many species is shifting to new areas, as well as disappearing from others62,63,64. This is especially important in pest management as predicting new areas could help set control measures for those areas and prevent outbreaks39,65,66. Although we produced models for three different CO2 emission scenarios, they all portray similar results, where there are suitable areas being both gained and lost. A positive side to this similarity in suitability is that management and control plans will probably be effective in all scenarios. On the other hand, it is interesting that such an aggressive pest like the AAW is predicted to show a slow expansion of their distribution, if compared to other similar pest species like processionary moths (Thaumetopoea spp.) or the box tree moth (Cydalima perspectalis)67,68. Climate change will likely alter the environmental suitability of all living organisms as it challenges their physiological limits69, and there is evidence that the geographical distribution of crop pests is moving increasingly polewards in response to climate change70,71. Due to this, it would be assumed that the expansion of the suitable areas would be much quicker or extensive, but these results might indicate the contrary, that climate change could reduce the suitable areas for its expansion. Factors affected by climate change, such as temperature, rainfall and relative humidity, seem to have mostly positive effects on fecundity and development of migratory pests like locusts72,73. However, for other lepidopteran pest species, like H. armigera, climate change has negatively affected its survival and reproduction74,75. Climate change is also reducing the amount of rainfall, which has had an impact on the ecosystem dynamics and vegetation structure of grasses in South Africa reducing grassland areas76, but also grass productivity, shifting these grasslands to shrubland and other tree-dominated biomes77,78. As grasses are the main food source for the AAW, it is coherent that all these lost suitable areas in our future scenario models might correspond to grass areas shifting to other vegetation patterns.

Global environmental suitability in the African continent resembles very much the previously reported distribution of African armyworm21 and appears in nearly all the same areas, that is, sub-humid areas, grasslands and croplands. Haggis’ study indicated that AAW has been recorded in India, South-East Asia, and Australia, where the models do predict a high environmental suitability, even though their presence there had not been used to generate it. This shows that the models are competent and can predict real areas where the species might expand into. There are areas, nevertheless, where the model does not predict high suitability, but the species has been recorded, like some parts of Indonesia, Arabia, and southern Africa. This could be due to the sample size and its limited geographic extent. Many authors (e.g.79,80) have reviewed this issue and it does seem to affect the accuracy and performance of SDMs. As our database is limited to Kenya and Tanzania, the selected variables will extrapolate to areas where the conditions are similar, that is why the prediction of suitability outside the tropics is not as accurate, as shown by the results of the MESS approach. Projections into colder regions seem likely to be inaccurate due to the variable response (Fig. 1), which have a clear upper limit. However, projections into areas with higher or lower precipitation rate might be more trustworthy due to a wider tolerance to change in precipitation26. Nonetheless, the worldwide model seems to predict an accurate environmental suitability in general.

In the global environmental suitability model, areas where the AAW has not been recorded but have a high suitability are intriguing. These are mostly in the Americas, especially between the tropics, where the climatic variables define the AAW’s niche. They also include coastal regions where there are grasses, like Pampas; or open woodlands, but also avoid tropical rainforests or arid areas due to their extreme conditions. The global environmental suitability of the AAW mirrors the environmental suitability and distribution of the FAW14 which has very similar environmental requirements, making them potentially competing species. The FAW, which is native to the American continent, was introduced into Africa, probably due to transportation of plants and crops, and rapidly spread to become one of the most important crop pests on the continent. Another example of this is H. armigera, which made a jump from Africa and Europe to the American continent13. The global model suggests that a similar thing could happen with the AAW on the American continent if it were introduced. Countries like Brazil, which is one of the world’s biggest maize producing countries could, in time, become hotspots for the AAW and enhance this global problem. Our models, and the variables used however, do not consider anthropogenic factors that could increase the migration and dispersal of S. exempta, such as global connectivity and human-mediated transport81, as it has been done for the fall armyworm14. If considered in future studies, this could confirm our findings about S. exempta ability to disperse throughout the American continents, which has already been considered as a potential risk82. This manifests the importance of revisiting and tightening international agricultural biosecurity, as invasive species are transported to new territories in a daily basis, aggravating the problem83,84.

Characterizing the climatic variables that explain or delineate the AAWs niche will help with a better understanding of the species’ biology and its possible management85. Future and global scenario models based on climatic variables, like the ones used in this study, are important to understand how invasive pest species might react to climate change or new areas if they are transported there. In fact, IPM studies often use these SDMs and niche characterization86 of important pest species such as the fall armyworm, S. frugiperda15, underlying its importance. However, to understand how the species will disperse in space and time, models should be used as part of a bigger research effort, including natural competence, or anthropogenic factors, such as bias in outbreak reporting, land use and management, transport, etc.

Finally, it is worth noting that SDMs are generally only used to predict suitable abiotic environments and seldom include detailed information regarding the presence of potential competitor species or natural enemies. Invasive fall armyworms have rapidly expanded throughout the African continent and globally88. It is considered a very aggressive and cannibalistic alien pest89,90 and feeds on a range of plant species, including the cereals and grasses that AAW specialises in, meaning there is a possibility of displacement, as it appears to be doing with other sympatric species, such as the Asiatic pink stem borer, Sesamia inferens (Walker) or the maize stalk borer, Busseola fusca (Füller)91,92. Given this, it is possible that although our SDM suggests that parts of the Americas are environmentally suitable for AAW to invade, in this environment it would be potentially competing with the native FAW, which is much more aggressive than AAW and is likely to be the stronger intra-guild competitor. It is therefore possible that AAW has previously reached the Americas but has failed to establish there due to competitive interactions with FAW or other natural enemies.

Materials and methods

Distribution data compilation

The presence records for Kenya and Tanzania were obtained from an updated version of WormBase33, which is a data management and information system that includes AAW outbreak and trap data for both countries since 1969. Outbreak data were used for the present study, where only presence records with defined geographic coordinates, following the WGS84 geographic coordinate system were used. Presence points that were inaccurate and duplicates were filtered using ArcGIS Pro. In total, 721 occurrence points, from 1984 to 2008, were obtained. 568 occurrence points were recorded from the years 1969–1990, and were used to make the first model, which predicted the current distribution.

Environmental data

Species Distribution Models (SDMs) require selecting biotic and/or abiotic environmental variables that relate to the distribution of the modelled species40, and to minimize uncertainties in modelling predictions it is important to understand which variables are more significant to the species by performing a good variable selection93.

Variables used in this study were the WorldClim Version 294 bundle of 19 global climatic layers from 1970 to 2000 in a 5 × 5 km resolution; and WorldClim CMIP Phase 6 (CIMP6)95 global climatic layers for future suitability models. We selected the 2061–2080 period for the BCC-CSM2-MR General Circulation Model (GCM)96 and three Shared Socio-economic Pathway (SSP): SSP1-2.6, which shows a gradual decline in emissions; SSP3-7.0, which would be an intermediate scenario where the CO2 emissions continue to rise in a similar fashion to now; and SSP5-8.5, which shows a dramatic rise in CO2 emissions97.

Variable selection

In previous modelling studies for the fall armyworm14, the variable selection was based on the life-history and environmental requirements for the species. Nonetheless, other studies98,99,100 suggest other analyses, such as Ecological Niche Factor Analysis (ENFA) or Principal Component Analysis (PCA), may be more robust, as they result in uncorrelated variables. This both eliminates information that might be redundant and means that the forecasts are not affected by changes in the correlation between environmental variables between time periods or regions. We followed the methodology described by Gómez-Undiano, 2018100, a method derived from Petipierre et al.98, which showed that a PCA resulted in a more accurate variable selection for better models. Therefore, we did a PCA with all the previously chosen variables and reduced the number to some main ones, based on the variance explained in the presences of S. exempta; this being the variables that had the greatest loadings on some of the PCA axes. The variables used for the future predicted suitability were the same as the ones resulting in the PCA, but from the 2021–2040 bundle. The variable selection was carried out in R v.4.0.2101 using RStudio v.1.3.1093.

Modelling environmental suitability

SDMs can be generated only with presence points but this can result in inaccurate and biased models102, so often, absence points are used too. However, absences are difficult to obtain, especially for mobile species like insects. However, studies suggest that selecting pseudo-absences, which could be generated randomly, helps to improve the quality of the models and their accuracy102,103,104. We followed the BIOMOD modelling algorithm105, using the ‘biomod2’ package106 in R for pseudo-absence generation, and selected 700 pseudo-absence points for the local distribution models in Kenya and Tanzania, to match the number of occurrences104. When extrapolating pseudo-absence data to the rest of the World, some authors107,108 suggest delimiting a geographical background to which the species could reasonably disperse, can improve SDM. We generated a background area (for the Worldwide ensemble model) of the limited area of Kenya and Tanzania to reduce extrapolation of the variables to non-analogue areas.

Predicting global suitability from a limited area, such as Kenya and Tanzania, means that predictions could be extrapolated to areas with very different climate to Kenya and Tanzania, which could be highly erroneous. To ensure the predictions are only made in areas with conditions similar to those in the data used to construct SDMs, the Multivariate Environmental Similarity Surface (MESS)47 was calculated using the R package ‘dismo’109.

Choosing one modelling statistic method can be challenging because different methods have advantages and disadvantages and tend to produce variable predictions. However, ensemble modelling results in producing more robust and reliable models110,111. We created an ensemble that includes five algorithms based on logistic regression and machine learning: artificial neural networks (ANN), classification tree analysis (CTA), flexible discriminant analysis (FDA), generalised additive models (GAM), generalised linear models (GLM), MaxEnt, random forest (RF) and Surface Range Model (or BIOCLIM). This process was undertaken using default parameters from the ‘biomod2’ package in R.

To evaluate the accuracy and robustness of the ensembled models, internal validation, which is included by default in the ‘biomod2’ setting, was used. We split the distribution data randomly into two, with 70% being used for the SDM calibration and 30% the validation set, using the area under the curve (AUC) of the receiver operation characteristic (ROC), and true skill statistic (TSS). 100 replicas were generated for each algorithm used, and models for which validation with AUC > 0.7 or TSS > 0.6 were selected to generate the final ensembles. Although studies generally use a 70–30% data split for the training and testing data e.g.14,112, we also generated additional models with different data-splits (10, 20, 30, 40, 50, 60, 80 and 90%) to ensure the model validation was robust (Supplementary Materials). External validation of the predictive model was constructed using outbreak data from 1969 to 1990 was also performed, by calculating the AUC of the model against the outbreak points from 1991 to 2008 as the validation set.

In total, three ensemble models showing environmental suitability for S. exempta were generated: (1) a predictive local model using recent (1970–2000) environmental conditions for Kenya and Tanzania and outbreak data sub-sample from years 1969 to 1990, which was validated against more recent data (1991–2008); (2) a present-time local model for Kenya and Tanzania using all outbreak data (1969 to 2008) with three projections for three CO2 emission scenarios (A. SSP1-2.6; B. SSP3-7.0; and C. SSP5-8.5) between 2061 and 2080; and, (3) a Worldwide present-time model using all outbreak data (1969 to 2008).

When looking at the future-scenario models, it is sometimes difficult to determine which are new areas that are more or less suitable for S. exempta. To make it easier to visualise, we converted the future scenario model projections and the present time model (using all the outbreak data) into binary maps using the cut-off values, based on TSS, of each projection. Then we combined each future scenario model projection with the present time one to get a categorical map showing new suitable and non-suitable areas.

Data availability

The datasets generated during and/or analysed during the current study will be available in the DRYAD repository, after the manuscript is accepted [https://datadryad.org/stash/share/t-EgQOweHgcOHQ_paK1ao6PQuRsnjkGCSh63_HD4n00] with DOI number [https://doi.org/10.5061/dryad.sbcc2fr9b].

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Acknowledgements

The authors thank Ian Stevenson for assistance with the database and analysis and the many farmers, extension workers and government officials who contributed to data collection over the 40 years of this study.

Funding

The funding was provided by Biotechnology and Biological Sciences Research Council (BB/P023444/1).

Author information

Authors and Affiliations

  1. Lancaster Environment Centre, Lancaster University, Lancaster, UKIrene Gómez-Undiano & Kenneth Wilson
  2. State Department for Crop Development & Agricultural Research, NARL Kabete, Waiyaki Way, Nairobi, KenyaFrancis Musavi
  3. Crop Bioscience Solutions Ltd., Arusha, TanzaniaWilfred L. Mushobozi
  4. Pest Control Services, Ministry of Agriculture and Food Security, Arusha, TanzaniaWilfred L. Mushobozi & Grace M. David
  5. CABI, Nairobi, KenyaRoger Day
  6. Centre for Ecology and Conservation, University of Exeter, Penryn, Cornwall, UKRegan Early

Contributions

I.G.U. and K.W. conceived the ideas of the project; I.G.U. designed the model and the computational framework, analysed the data, and took the lead in writing the manuscript, with the help of K.W.; R.E. aided in interpreting the results and worked on the manuscript. F.M., W.L.M., G.M.D. and R.D. contributed to the interpretation of the results and to the writing of the manuscript. All authors contributed critically to the drafts and gave final approval for publication.

Corresponding author

Correspondence to Irene Gómez-Undiano.

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Brassica Alert better targets agronomy decisions

Farming Online

06 Jul 2022

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Agronomy / Arable

Brassica crop growers and agronomists now have the chance to better tailor disease and pest control programmes to specific threats this season, with the more advanced and targeted Brassica Alert monitoring and forecasting decision support tool.

Created and managed by the Allium & Brassica Centre, sponsored by Syngenta, Brassica Alert now utilises new more sophisticated pheromone trapping and monitoring of early pest presence, coupled to disease spore trapping and powerful weather modelling, to provide real-time risk assessments.  

Brassica Alert gives traffic-light style warning for impending risk of ringspot and white blister, along with major pests, thrip, diamond back moth and silver Y moth.  Growers and agronomist can opt to receive text updates to view the latest reports on the Syngenta website.  

Early season reports had seen a low initial risk of ringspot in dry conditions, but high-risk warning for white blister, which requires only limited leaf wetness to develop. Silver Y moth had been identified at red warning high-risk populations on 90% of monitoring sites across the eastern counties, however thrip and diamond back moth were at low numbers.

Carl Sharp of the Allium & Brassica Centre said: “Brassica Alert has allowed growers the flexibility of going from what was an industry-standard fixed spray interval disease control programme, to targeted applications choosing products most suitable at the time of application.

“In our independent trials has shown that two targeted fungicide applications indicated by Brassica Alert, gave comparative disease control, marketable yield and quality as using the standard four to five spray programme.

“The combination of climatic data and spore trapping has given consistent results with regards to reliability,” he added.

Syngenta digital agronomy specialist, Ed Flint, highlighted Brassica Alert has proven the potential for forecasting tools to help growers better target treatments and strengthen decision making.

“The greatest benefit comes when you start to couple decision support tools together,” he advocated.

“Growers who use Brassica Alert in combination with Syngenta Spray Assist, for example, can identify appropriate spray window opportunities for application timing ahead of pest or disease outbreaks – along with advice on the optimum application technique for the intended target, to get the best results possible.”

Brassica Alert is particularly well suited for preventative brassica fungicide programmes including Amistar Top and Plover, along with pest control programmes including Hallmark Zeon and Minecto One.   

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 Grahame Jackson/ PestNet

 Sydney NSW, Australia

 For your information

 6 days ago

 0

TAR SPOT, MAIZE – ECUADOR

ProMED
http://www.promedmail.org

Source: Reliefweb, FAO report [summ. Mod.DHA, edited]
https://reliefweb.int/report/ecuador/giews-country-brief-ecuador-15-june-2022
In Ecuador, harvesting of the 2022 main season maize crops is ongoing under favourable weather conditions. Yields are expected to be below average due to low precipitation in key producing provinces. In addition, a fungal disease called tar spot (mancha de asfalto) reportedly affected maize crops, with negative effects on yields.

Communicated by:
ProMED
[Tar spot of maize has been known to lead to serious yield losses of up to 75% in Central and South America. It is considered to be a disease complex involving the synergistic association of at least 3 fungal species: _Phyllachora maydis_, _Microdochium maydis_ (previously _Monographella maydis_) and _Coniothyrium phyllachorae_.

Of these, _P. maydis_ is usually the 1st to cause leaf lesions. While _M. maydis_ is a common benign saprophyte on leaf surfaces, it becomes highly virulent only in association with _P. maydis_ and forms necrotic rings around the _P. maydis_ lesions. _C. phyllachorae_ may be a hyperparasite of the other 2, but its role is not fully understood yet. Leaf lesions may coalesce, causing blight and complete burning of the foliage. In addition, characteristic black shiny spots (“tar spots”) are produced both within lesions and on other leaf areas. Affected ears have fewer kernels which may germinate prematurely on the cob. Weakening of stems may lead to increased lodging. The disease reduces photosynthetic potential and therefore plant vigour.

_P. maydis_ is an obligate parasite; its spores are spread by wind and with infected plant material. It produces a potent toxin killing plant tissue. The disease is favoured by cool, humid conditions. Tar spot management may include fungicide treatments and use of maize varieties with tolerance or low sensitivity to the disease. However, resistance breeding is difficult because of the involvement of multiple pathogens. So far, little is known about the genetics of tar spot resistance.

Maps
Ecuador:
https://www.worldometers.info/img/maps/ecuador_physical_map.gif and
https://images.mapsofworld.com/ecuador/ecuador-political-map.jpg (provinces)
Americas, overview:
https://www.worldofmaps.net/typo3temp/images/karte-nord-und-suedamerika.jpg

Pictures
Tar spot on maize leaves:
https://ipcm.wisc.edu/wp-content/uploads/sites/54/2018/12/IMG_0418.jpg and
https://ag.purdue.edu/btny/cdcruzlab/wp-content/uploads/2020/04/TS16-scaled.jpg
Tar spot symptoms on maize ears:
https://www.canr.msu.edu/corn/uploads/images/Tar%20spot%20on%20ear%20-%20cropped.jpg,
http://i.ytimg.com/vi/ErB9pdiXPp4/maxresdefault.jpg and
https://c1.staticflickr.com/5/4123/4886728754_57fe0982e9_b.jpg

Links
Information on tar spot complex of maize:
https://doi.org/10.1094/PDIS-02-20-0449-FE,
https://www.extension.purdue.edu/extmedia/BP/BP-90-W.pdf,
https://www.agweb.com/news/crops/crop-production/tar-spot-what-you-need-know-about-new-corn-disease,
https://www.researchgate.net/publication/266732736_Tar_Spot_Complex_of_Maize_Facts_and_Actions,
https://doi.org/10.1111/j.1365-3059.1995.tb01671.x,
https://www.youtube.com/watch?v=ErB9pdiXPp4 and
https://www.apsnet.org/publications/phytopathology/backissues/Documents/1992Articles/Phyto82n05_505.PDF
Tar spot information & resources via:
https://www.cimmyt.org/tag/tar-spot-complex/
Recent updates on tar spot in North America:
https://phys.org/news/2022-01-pathologists-collaborate-knowledge-threat-corn.html,
https://www.newfoodmagazine.com/news/161116/plant-pathologists-leading-fight-against-damaging-corn-disease-tar-spot/ and
https://eu.thedailyreporter.com/story/news/2022/02/22/msue-farmer-education-day-focuses-corn-tar-spot-which-hit-michigan/6881223001/
_Phyllachora maydis_ taxonomy:
http://www.indexfungorum.org/Names/NamesRecord.asp?RecordID=167673
_Microdochium maydis_ taxonomy and synonyms:
http://www.indexfungorum.org/Names/NamesRecord.asp?RecordID=811970 and
http://www.speciesfungorum.org/GSD/GSDspecies.asp?RecordID=811970
_Coniothyrium phyllachorae_ taxonomy:
http://www.indexfungorum.org/Names/NamesRecord.asp?RecordID=178431
– Mod.DHA

 Maize

 Tar_spot

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New data on quarantine pests and pests of the EPPO Alert List

By searching through the literature, the EPPO Secretariat has extracted the following new data concerning quarantine pests and pests included (or formerly included) on the EPPO Alert List, and indicated in bold the situation of the pest concerned using the terms of ISPM 8.

  • New records

In China, Ralstonia syzygii subsp. indonesiensis (EPPO A1 List) was isolated for the first time from wilted tobacco (Nicotiana tabacum). The identity of the bacteria was confirmed by sequencing. This is the first record of this subspecies on tobacco, and the first record of the species in China (Lu et al., 2021).

In Brazil, Zaprionus tuberculatus (Diptera: Drosophilidae – formerly EPPO Alert List) was first recorded in January 2020 in urban parks in Brasilia (Distrito Federal) and in 2021 in several natural reserves around the city. This is the first record of the species in the Americas (Cavalcanti et al., 2021).

  • Detailed records

In the USA, Elsinoë australis (EU Annexes), the causal agent of sweet orange scab, is first reported from Alabama. Two quarantine areas have been established in Baldwin and Mobile counties, respectively (NAPPO, 2021). 

The pest status of Elsinoë australis in the USA is officially declared as: Present: not widely distributed and under official control.

In Western Siberia (RU), Ips amitinus (Coleoptera: Curculionidae: Scolytinae – EU Annexes) was first recorded in 2019 in Tomsk (237 ha) and Kemerovo oblasts (1033 ha), damaging Pinus sibirica (Siberian pine) (EPPO RS 2020/067). Further studies have shown that the pest rapidly spread within Siberian pine forests in Tomsk, Kemerovo, and Novosibirsk oblasts, covering an area of 31 200 km². Considering its spread towards the east, and the fact that I. amitinus successfully colonized P. koraiensis (Korean pine) in an arboretum near Tomsk, the authors noted that I. amitinus might also represent a threat to P. koraiensis in the Russian Far East (Kerchev et al., 2022).

In France, in the framework of the official surveys for potato cyst nematodes, Globodera rostochiensis (EPPO A2 List) was detected in a field of potato (Solanum tuberosum) in Puy-de-Dôme department (Auvergne-Rhônes-Alpes region). Eradication measures are applied (NPPO of France, 2022-05). 

The pest status of Globodera rostochiensis in France is officially declared as: Transient, actionable, under eradication.

In Iran, tomato brown rugose fruit virus (Tobamovirus, ToBRFV – EPPO A2 List) had previously been reported from tomato crops (EPPO RS 2021/235). It has been also reported from symptomatic bell pepper crops (Capsicum sp.) in late December 2021 (Esmaeilzadeh & Koolivand, 2021).

In the United Kingdom, tomato brown rugose fruit virus (Tobamovirus, ToBRFV – EPPO A2 List) was declared eradicated in December 2021 (EPPO RS 2022/018). In May 2022, a new outbreak was confirmed in a tomato production site in the West Midlands which had been first infected in 2020. Eradication measures are applied. 

The pest status of tomato brown rugose fruit virus in the United Kingdom is officially declared as: Present: not widely distributed and under official control.

In Western Australia (AU), Thekopsora minima (EPPO A2 List) was found for the first time in April 2022. This blueberry rust has been found in several locations, including the Perth metropolitan area, Manjimup, and Swan View. In Australia, T. minima is present in New South Wales, Queensland, and Victoria, and is subject to containment measures in Tasmania. In Western Australia, eradication of the disease is not considered feasible (Government of Western Australia, Greenlife Industry Australia, 2022).

Citrus canker caused by Xanthomonas citri pv. citri (EPPO A1 List) was found in a nursery in South Carolina (USA) in February 2022 on Citrus meyeri and Citrus aurantifolia. Eradication measures are applied in the nursery and trace-forward activities are conducted to trace and destroy citrus plants sold to customers in 11 US states (Alabama, California, Florida, Georgia, Louisiana, Mississippi, Nevada, Oregon, South Carolina, Texas, and Washington) (USDA-APHIS, 2022).

  • New pests and taxonomy

The causal agent of a severe needle blight disease observed in New Zealand (Gisborne region, North Island) on Podocarpus totara (Podocarpaceae) has been identified as a new phytophthora species called Phytophthora podocarpi sp. nov. Affected totara trees show needle dieback in the lower crown. Infected needles initially turn khaki in colour, then blacken and fall. Shoot infection causes the needles above the point of infection to turn brown, and as these remain attached, affected trees have a scorched appearance. To-date, the disease has affected a small number of trees and no mortality has been observed (Dobbie et al., 2022).

Sources

Cavalcanti FA, Ribeiro LB, Marins G, Tonelli GS, Báo SN, Yassin A, Tidon R (2021) Geographic expansion of an invasive fly: first record of Zaprionus tuberculatus (Diptera: Drosophilidae) in the Americas. Annals of the Entomological Society of America, saab052. https://doi.org/10.1093/aesa/saab052 

Dobbie K, Scott P, Taylor P, Panda P, Sen D, Dick M, McDougal R (2022) Phytophthora podocarpi sp. nov. from diseased needles and shoots of Podocarpus in New Zealand. Forests 13, 214. https://doi.org/10.3390/f13020214

Esmaeilzadeh F, Koolivand D (2022) First report of tomato brown rugose fruit virus infecting bell pepper in Iran. Journal of Plant Pathology (early view). https://doi.org/10.1007/s42161-022-01094-2

Government of Western Australia (2022-05-16) Blueberry rust: biosecurity alert. https://www.agric.wa.gov.au/plant-biosecurity/blueberry-rust-declared-pest#:~:text=Blueberry%20rust%20

Greenlife Industry Australia (2022) Blueberry rust in Western Australia. https://www.greenlifeindustry.com.au/communications-centre/blueberry-rust-in-western-australia

Kerchev IA, Krivets SA, Bisirova EM, Smirnov NA (2022) Distribution of the small spruce bark beetle Ips amitinus (Eichhoff, 1872) in Western Siberia. Russian Journal of Biological Invasions 13(1), 58–63. https://doi.org/10.1134/S2075111722010076

Lu CH, Li JY, Mi MG, Lin ZL, Jiang N, Gai XT, Jun-Hong M, Lei LP, Xia ZY (2021) Complete genome sequence of Ralstonia syzygii subsp. indonesiensis strain LLRS-1, isolated from wilted tobacco in China. Phytopathology 111(12), 2392-2394.

NAPPO Phytosanitary Pest Alert System. Official Pest Reports. Elsinoë australis (causal agent of Sweet Orange Scab): APHIS adds Baldwin and Mobile Counties in Alabama to the Domestic Quarantine Area (2021-12-17) https://pestalerts.org/official-pest-report/elsino-australis-causal-agent-sweet-orange-scab-aphis-adds-baldwin-and-mobile.

NPPO of France (2022-05).

NPPO of the United Kingdom (2022-05).

USDA-Aphis (2022-03-08) USDA confirms citrus canker in a South Carolina nursery and takes action. https://www.aphis.usda.gov/aphis/ourfocus/planthealth/plant-pest-and-disease-programs/pests-and-diseases/citrus/citrus-canker/citrus-canker

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